Erlenmeyer Flask Episode: The Erlenmeyer Flask In a top secret containment facility in Maryland, Scully steals an alien fetus, which has been used to develop an extraterrestrial virus. It is returned in exchange for Mulder, but at the expense of Deep Throat's life.

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"Ascension" Aliens Episode: Duane Barry/Ascension These aliens abduct Duane Barry, place metallic implants in his nasal cavity, and conduct tortuous experiments on him. Once Duane turns Agt. Scully over to these beings, she is forced to undergo similar experiments, and receives an implant in the back of her neck.

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"Conduit" Aliens Episode: Conduit Lake Okobogee, Iowa, serves as a UFO "hot spot", where aliens kidnap Ruby Morris from her sleeping bag in the middle of the night. It is discovered that her brother, Kevin Morris, is able to intercept their transmissions as a living "conduit." Ruby Morris is ultimately returned to her family.

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The Kindred Episode: Genderbender At first glance, this sect, located in Massachusetts, is merely a group of religious isolationists famous for their abstinence and pure Christian beliefs. In reality, they are alien "pilgrims", with the ability to shift gender at will. They also demonstrate a propensity to leave behind crop circles.

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"Paper Clip" UFO Episode: Paper Clip As the agents investigate the Strughold Mining Company in West Virginia after a tip from their informant, Deep Throat, they discover endless rows of filing cabinets containing tissue samples on thousands of U.S. citizens. Their search is interrupted when a UFO drops from the sky and a government hit squad surrounds them.

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