List of References
Thesis Henry Jonker: PC4 and VP16
1. |
Lander, E. S., Linton, L. M.,
Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K.,
Doyle, M., FitzHugh, W., Funke, R., Gage, D., Harris, K., Heaford, A.,
Howland, J., Kann, L., Lehoczky, J., LeVine, R., McEwan, P., McKernan,
K., Meldrim, J., Mesirov, J. P., Miranda, C., Morris, W., Naylor, J., Raymond,
C., Rosetti, M., Santos, R., Sheridan, A., Sougnez, C., Stange-Thomann,
N., Stojanovic, N., Subramanian, A., Wyman, D., Rogers, J., Sulston, J.,
Ainscough, R., Beck, S., Bentley, D., Burton, J., Clee, C., Carter, N.,
Coulson, A., Deadman, R., Deloukas, P., Dunham, A., Dunham, I., Durbin,
R., French, L., Grafham, D., Gregory, S., Hubbard, T., Humphray, S., Hunt,
A., Jones, M., Lloyd, C., McMurray, A., Matthews, L., Mercer, S., Milne,
S., Mullikin, J. C., Mungall, A., Plumb, R., Ross, M., Shownkeen, R., Sims,
S., Waterston, R. H., Wilson, R. K., Hillier, L. W., McPherson, J. D.,
Marra, M. A., Mardis, E. R., Fulton, L. A., Chinwalla, A. T., Pepin, K.
H., Gish, W. R., Chissoe, S. L., Wendl, M. C., Delehaunty, K. D., Miner,
T. L., Delehaunty, A., Kramer, J. B., Cook, L. L., Fulton, R. S., Johnson,
D. L., Minx, P. J., Clifton, S. W., Hawkins, T., Branscomb, E., Predki,
P., Richardson, P., Wenning, S., Slezak, T., Doggett, N., Cheng, J. F.,
Olsen, A., Lucas, S., Elkin, C., Uberbacher, E., Frazier, M., et al. (2001)
Nature 409, 860-921. |
2. |
Luger, K., Mader, A. W., Richmond,
R. K., Sargent, D. F., and Richmond, T. J. (1997) Nature389, 251-60. |
3. |
Davey, C. A., Sargent, D. F.,
Luger, K., Maeder, A. W., and Richmond, T. J. (2002) J Mol Biol319,
1097-113. |
4. |
Belikov, S., and Karpov, V.
(1998) FEBS Lett 441, 161-4. |
5. |
Wu, J., and Grunstein,
M. (2000) Trends Biochem Sci 25, 619-23. |
6. |
Kornberg, R. D., and Lorch,
Y. (1999) Cell 98, 285-94. |
7. |
Berger, S. L. (2001) Oncogene
20, 3007-13. |
8. |
Urnov, F. D., and Wolffe, A.
P. (2001) Oncogene 20, 2991-3006. |
9. |
Nowak, S. J., and Corces, V.
G. (2000) Genes Dev 14, 3003-13. |
10. |
Hsu, J. Y., Sun, Z. W., Li,
X., Reuben, M., Tatchell, K., Bishop, D. K., Grushcow, J. M., Brame, C.
J., Caldwell, J. A., Hunt, D. F., Lin, R., Smith, M. M., and Allis, C.
D. (2000) Cell 102, 279-91. |
11. |
Wei, Y., Yu, L., Bowen, J.,
Gorovsky, M. A., and Allis, C. D. (1999) Cell 97, 99-109. |
12. |
Lo, W. S., Duggan, L., Tolga,
N. C., Emre, Belotserkovskya, R., Lane, W. S., Shiekhattar, R., and Berger,
S. L. (2001) Science 293, 1142-6. |
13. |
Cheung, P., Tanner, K. G., Cheung,
W. L., Sassone-Corsi, P., Denu, J. M., and Allis, C. D. (2000) Mol Cell
5, 905-15. |
14. |
Rea, S., Eisenhaber, F., O'Carroll,
D., Strahl, B. D., Sun, Z. W., Schmid, M., Opravil, S., Mechtler, K., Ponting,
C. P., Allis, C. D., and Jenuwein, T. (2000) Nature 406,
593-9. |
15. |
Rice, J. C., and Allis, C. D.
(2001) Curr Opin Cell Biol 13, 263-73. |
16. |
Stallcup, M. R. (2001) Oncogene
20, 3014-20. |
17. |
Lachner, M., O'Carroll, D.,
Rea, S., Mechtler, K., and Jenuwein, T. (2001) Nature 410,
116-20. |
18. |
Bannister, A. J., Zegerman,
P., Partridge, J. F., Miska, E. A., Thomas, J. O., Allshire, R. C., and
Kouzarides, T. (2001) Nature 410, 120-4. |
19. |
Nakayama, J., Rice, J. C., Strahl,
B. D., Allis, C. D., and Grewal, S. I. (2001) Science 292,
110-3. |
20. |
Hampsey, M., and Reinberg, D.
(2003) Cell 113, 429-32. |
21. |
Robzyk, K., Recht, J., and Osley,
M. A. (2000) Science 287, 501-4. |
22. |
Pham, A. D., and Sauer, F. (2000)
Science 289, 2357-60. |
23. |
Varga-Weisz, P. (2001) Oncogene
20, 3076-85. |
24. |
Kornberg, R. D., and Lorch,
Y. (1999) Curr Opin Genet Dev 9, 148-51. |
25. |
Aalfs, J. D., and Kingston,
R. E. (2000) Trends Biochem Sci 25, 548-55. |
26. |
Lorch, Y., Zhang, M., and Kornberg,
R. D. (1999) Cell 96, 389-92. |
27. |
Langst, G., Bonte, E. J., Corona,
D. F., and Becker, P. B. (1999) Cell 97, 843-52. |
28. |
Hamiche, A., Sandaltzopoulos,
R., Gdula, D. A., and Wu, C. (1999) Cell 97, 833-42. |
29. |
Kingston, R. E., Bunker, C.
A., and Imbalzano, A. N. (1996) Genes Dev 10, 905-20. |
30. |
Kornberg, R. D. (1999) Trends
Cell Biol 9, M46-9. |
31. |
Ptashne, M., and Gann, A. (1997)
Nature 386, 569-77. |
32. |
Orphanides, G., Lagrange, T.,
and Reinberg, D. (1996) Genes Dev 10, 2657-83. |
33. |
Roeder, R. G. (1996) Trends
Biochem Sci 21, 327-35. |
34. |
Woychik, N. A., and Hampsey,
M. (2002) Cell 108, 453-63. |
35. |
Hampsey, M., and Reinberg, D.
(1999) Curr Opin Genet Dev 9, 132-9. |
36. |
Myers, L. C., and Kornberg,
R. D. (2000) Annu Rev Biochem 69, 729-49. |
37. |
Bjorklund, S., Almouzni, G.,
Davidson, I., Nightingale, K. P., and Weiss, K. (1999) Cell 96,
759-67. |
38. |
Koleske, A. J., and Young, R.
A. (1994) Nature 368, 466-9. |
39. |
Myer, V. E., and Young, R. A.
(1998) J Biol Chem 273, 27757-60. |
40. |
Lemon, B., and Tjian, R. (2000)
Genes Dev 14, 2551-69. |
41. |
Nikolov, D. B., and Burley,
S. K. (1997) Proc Natl Acad Sci U S A 94, 15-22. |
42. |
Verrijzer, C. P., and Tjian,
R. (1996) Trends Biochem Sci 21, 338-42. |
43. |
Green, M. R. (2000) Trends
Biochem Sci 25, 59-63. |
44. |
Albright, S. R., and Tjian,
R. (2000) Gene 242, 1-13. |
45. |
Gangloff, Y. G., Romier, C.,
Thuault, S., Werten, S., and Davidson, I. (2001) Trends Biochem Sci
26, 250-7. |
46. |
Cortes, P., Flores, O., and
Reinberg, D. (1992) Mol Cell Biol 12, 413-21. |
47. |
Zawel, L., and Reinberg, D.
(1993) Prog Nucleic Acid Res Mol Biol 44, 67-108. |
48. |
Berk, A. J. (1999) Curr Opin
Cell Biol 11, 330-5. |
49. |
Geiger, J. H., Hahn, S., Lee,
S., and Sigler, P. B. (1996) Science 272, 830-6. |
50. |
Tan, S., Hunziker, Y., Sargent,
D. F., and Richmond, T. J. (1996) Nature 381, 127-51. |
51. |
Zhu, W., Zeng, Q., Colangelo,
C. M., Lewis, M., Summers, M. F., and Scott, R. A. (1996) Nat Struct
Biol 3, 122-4. |
52. |
Chen, H. T., Legault, P., Glushka,
J., Omichinski, J. G., and Scott, R. A. (2000) Protein Sci 9,
1743-52. |
53. |
Tsai, F. T., and Sigler, P.
B. (2000) Embo J 19, 25-36. |
54. |
Nikolov, D. B., Chen, H., Halay,
E. D., Usheva, A. A., Hisatake, K., Lee, D. K., Roeder, R. G., and Burley,
S. K. (1995) Nature 377, 119-28. |
55. |
Bagby, S., Kim, S., Maldonado,
E., Tong, K. I., Reinberg, D., and Ikura, M. (1995) Cell 82,
857-67. |
56. |
Hayashi, F., Ishima, R., Liu,
D., Tong, K. I., Kim, S., Reinberg, D., Bagby, S., and Ikura, M. (1998)
Biochemistry 37, 7941-51. |
57. |
Ha, I., Roberts, S., Maldonado,
E., Sun, X., Kim, L. U., Green, M., and Reinberg, D. (1993)
Genes Dev
7, 1021-32. |
58. |
Tan, S., Conaway, R. C., and
Conaway, J. W. (1995) Proc Natl Acad Sci U S A 92, 6042-6. |
59. |
Gaiser, F., Tan, S., and Richmond,
T. J. (2000) J Mol Biol 302, 1119-27. |
60. |
Kamada, K., De Angelis, J.,
Roeder, R. G., and Burley, S. K. (2001) Proc Natl Acad Sci U S A98,
3115-20. |
61. |
Nguyen, B. D., Chen, H. T.,
Kobor, M. S., Greenblatt, J., Legault, P., and Omichinski, J. G. (2003)
Biochemistry 42, 1460-9. |
62. |
Groft, C. M., Uljon, S. N.,
Wang, R., and Werner, M. H. (1998) Proc Natl Acad Sci U S A 95,
9117-22. |
63. |
Kamada, K., Roeder, R. G., and
Burley, S. K. (2003) Proc Natl Acad Sci U S A 100, 2296-9. |
64. |
Holstege, F. C., van der Vliet,
P. C., and Timmers, H. Th. M. (1996) Embo J 15, 1666-77. |
65. |
Okuda, M., Watanabe, Y., Okamura,
H., Hanaoka, F., Ohkuma, Y., and Nishimura, Y. (2000)
Embo J 19,
1346-56. |
66. |
Coulombe, B., and Burton, Z.
F. (1999) Microbiol Mol Biol Rev 63, 457-78. |
67. |
Robert, F., Douziech, M., Forget,
D., Egly, J. M., Greenblatt, J., Burton, Z. F., and Coulombe, B. (1998)
Mol Cell 2, 341-51. |
68. |
Conaway, J. W., Shilatifard,
A., Dvir, A., and Conaway, R. C. (2000) Trends Biochem Sci 25,
375-80. |
69. |
Dvir, A., Conaway, J. W., and
Conaway, R. C. (2001) Curr Opin Genet Dev 11, 209-14. |
70. |
Seroz, T., Hwang, J. R., Moncollin,
V., and Egly, J. M. (1995) Curr Opin Genet Dev 5, 217-21. |
71. |
Egly, J. M. (2001) FEBS Lett
498, 124-8. |
72. |
Svejstrup, J. Q., Wang, Z.,
Feaver, W. J., Wu, X., Bushnell, D. A., Donahue, T. F., Friedberg, E. C.,
and Kornberg, R. D. (1995) Cell 80, 21-8. |
73. |
Schaeffer, L., Roy, R., Humbert,
S., Moncollin, V., Vermeulen, W., Hoeijmakers, J. H., Chambon, P., and
Egly, J. M. (1993) Science 260, 58-63. |
74. |
Lu, H., Zawel, L., Fisher, L.,
Egly, J. M., and Reinberg, D. (1992) Nature 358, 641-5. |
75. |
Dahmus, M. E. (1996) J Biol
Chem 271, 19009-12. |
76. |
Schneider, E., Kartarius, S.,
Schuster, N., and Montenarh, M. (2002) Oncogene 21, 5031-7. |
77. |
Akoulitchev, S., Chuikov, S.,
and Reinberg, D. (2000) Nature 407, 102-6. |
78. |
Douziech, M., Coin, F., Chipoulet,
J. M., Arai, Y., Ohkuma, Y., Egly, J. M., and Coulombe, B. (2000) Mol
Cell Biol 20, 8168-77. |
79. |
Kim, T. K., Ebright, R. H.,
and Reinberg, D. (2000) Science 288, 1418-22. |
80. |
Schultz, P., Fribourg, S., Poterszman,
A., Mallouh, V., Moras, D., and Egly, J. M. (2000) Cell102, 599-607. |
81. |
Chang, W. H., and Kornberg,
R. D. (2000) Cell 102, 609-13. |
82. |
Fribourg, S., Kellenberger,
E., Rogniaux, H., Poterszman, A., Van Dorsselaer, A., Thierry, J. C., Egly,
J. M., Moras, D., and Kieffer, B. (2000) J Biol Chem 275,
31963-71. |
83. |
Gervais, V., Busso, D., Wasielewski,
E., Poterszman, A., Egly, J. M., Thierry, J. C., and Kieffer, B. (2001)
J Biol Chem 276, 7457-64. |
84. |
Kornberg, R. D. (2001) Biol
Chem 382, 1103-7. |
85. |
Murray, S., Udupa, R., Yao,
S., Hartzog, G., and Prelich, G. (2001) Mol Cell Biol 21,
4089-96. |
86. |
Cramer, P., Bushnell, D. A.,
and Kornberg, R. D. (2001) Science 292, 1863-76. |
87. |
Gnatt, A. L., Cramer, P., Fu,
J., Bushnell, D. A., and Kornberg, R. D. (2001) Science 292,
1876-82. |
88. |
Kolodziej, P. A., Woychik, N.,
Liao, S. M., and Young, R. A. (1990) Mol Cell Biol 10, 1915-20. |
89. |
Kayukawa, K., Makino, Y., Yogosawa,
S., and Tamura, T. (1999) Gene 234, 139-47. |
90. |
Klug, A. (2001) Science
292, 1844-6. |
91. |
Armache, K. J., Kettenberger,
H., and Cramer, P. (2003) Proc Natl Acad Sci U S A 100, 6964-8. |
92. |
Todone, F., Brick, P., Werner,
F., Weinzierl, R. O., and Onesti, S. (2001) Mol Cell 8, 1137-43. |
93. |
Orlicky, S. M., Tran, P. T.,
Sayre, M. H., and Edwards, A. M. (2001) J Biol Chem 276,
10097-102. |
94. |
Orphanides, G., and Reinberg,
D. (2000) Nature 407, 471-5. |
95. |
Fry, C. J., and Peterson, C.
L. (2002) Science 295, 1847-8. |
96. |
Triezenberg, S. J. (1995) Curr
Opin Genet Dev 5, 190-6. |
97. |
Mitchell, P. J., and Tjian,
R. (1989) Science 245, 371-8. |
98. |
Cress, W. D., and Triezenberg,
S. J. (1991) Science 251, 87-90. |
99. |
Regier, J. L., Shen, F., and
Triezenberg, S. J. (1993) Proc Natl Acad Sci U S A 90, 883-7. |
100. |
Blair, W. S., Bogerd, H. P.,
Madore, S. J., and Cullen, B. R. (1994) Mol Cell Biol 14,
7226-34. |
101. |
Lin, J., Chen, J., Elenbaas,
B., and Levine, A. J. (1994) Genes Dev 8, 1235-46. |
102. |
Jackson, B. M., Drysdale, C.
M., Natarajan, K., and Hinnebusch, A. G. (1996) Mol Cell Biol 16,
5557-71. |
103. |
Iniguez-Lluhi, J. A., Lou, D.
Y., and Yamamoto, K. R. (1997) J Biol Chem 272, 4149-56. |
104. |
Almlof, T., Gustafsson, J. A.,
and Wright, A. P. (1997) Mol Cell Biol 17, 934-45. |
105. |
Tompa, P. (2002) Trends Biochem
Sci 27, 527-33. |
106. |
Wright, P. E., and Dyson, H.
J. (1999) J Mol Biol 293, 321-31. |
107. |
Uesugi, M., Nyanguile, O., Lu,
H., Levine, A. J., and Verdine, G. L. (1997) Science 277,
1310-3. |
108. |
Kussie, P. H., Gorina, S., Marechal,
V., Elenbaas, B., Moreau, J., Levine, A. J., and Pavletich, N. P. (1996)
Science 274, 948-53. |
109. |
Uesugi, M., and Verdine, G.
L. (1999) Proc Natl Acad Sci U S A 96, 14801-6. |
110. |
Radhakrishnan, I., Perez-Alvarado,
G. C., Parker, D., Dyson, H. J., Montminy, M. R., and Wright, P. E. (1997)
Cell 91, 741-52. |
111. |
Zor, T., Mayr, B. M., Dyson,
H. J., Montminy, M. R., and Wright, P. E. (2002) J Biol Chem 277,
42241-8. |
112. |
Harris, S. F., and Botchan,
M. R. (1999) Science 284, 1673-7. |
113. |
Nagadoi, A., Nakazawa, K., Uda,
H., Okuno, K., Maekawa, T., Ishii, S., and Nishimura, Y. (1999) J Mol
Biol 287, 593-607. |
114. |
Cho, H. S., Liu, C. W., Damberger,
F. F., Pelton, J. G., Nelson, H. C., and Wemmer, D. E. (1996) Protein
Sci 5, 262-9. |
115. |
Lee, H., Mok, K. H., Muhandiram,
R., Park, K. H., Suk, J. E., Kim, D. H., Chang, J., Sung, Y. C., Choi,
K. Y., and Han, K. H. (2000) J Biol Chem 275, 29426-32. |
116. |
Rudiger, S., Freund, S. M.,
Veprintsev, D. B., and Fersht, A. R. (2002) Proc Natl Acad Sci U S A99,
11085-90. |
117. |
Parker, D., Rivera, M., Zor,
T., Henrion-Caude, A., Radhakrishnan, I., Kumar, A., Shapiro, L., Wright,
P., Montminy, M., and Brindle, P. K. (1999) Mol Cell Biol 19,
5601-7. |
118. |
Hermann, S., Berndt, K. D.,
and Wright, A. P. (2001) J Biol Chem 276, 40127-32. |
119. |
Weir, J. P. (2001) Gene
271, 117-30. |
120. |
Wysocka, J., and Herr, W. (2003)
Trends Biochem Sci 28, 294-304. |
121. |
Campbell, M. E., Palfreyman,
J. W., and Preston, C. M. (1984) J Mol Biol 180, 1-19. |
122. |
Triezenberg, S. J., Kingsbury,
R. C., and McKnight, S. L. (1988) Genes Dev 2, 718-29. |
123. |
Hayes, S., and O'Hare, P. (1993)
J Virol 67, 852-62. |
124. |
Liu, Y., Gong, W., Huang, C.
C., Herr, W., and Cheng, X. (1999) Genes Dev 13, 1692-703. |
125. |
Herr, W. (1998) Cold Spring
Harb Symp Quant Biol 63, 599-607. |
126. |
Luciano, R. L., and Wilson,
A. C. (2002) Proc Natl Acad Sci U S A 99, 13403-8. |
127. |
Ranish, J. A., Yudkovsky, N.,
and Hahn, S. (1999) Genes Dev 13, 49-63. |
128. |
Jiang, Y., Triezenberg, S. J.,
and Gralla, J. D. (1994) J Biol Chem 269, 5505-8. |
129. |
Stringer, K. F., Ingles, C.
J., and Greenblatt, J. (1990) Nature 345, 783-6. |
130. |
Kobayashi, N., Boyer, T. G.,
and Berk, A. J. (1995) Mol Cell Biol 15, 6465-73. |
131. |
Kobayashi, N., Horn, P. J.,
Sullivan, S. M., Triezenberg, S. J., Boyer, T. G., and Berk, A. J. (1998)
Mol Cell Biol 18, 4023-31. |
132. |
Lin, Y. S., Ha, I., Maldonado,
E., Reinberg, D., and Green, M. R. (1991) Nature 353, 569-71. |
133. |
Zhu, H., Joliot, V., and Prywes,
R. (1994) J Biol Chem 269, 3489-97. |
134. |
Xiao, H., Pearson, A., Coulombe,
B., Truant, R., Zhang, S., Regier, J. L., Triezenberg, S. J., Reinberg,
D., Flores, O., Ingles, C. J., and et al. (1994) Mol Cell Biol 14,
7013-24. |
135. |
Goodrich, J. A., Hoey, T., Thut,
C. J., Admon, A., and Tjian, R. (1993) Cell 75, 519-30. |
136. |
Klemm, R. D., Goodrich, J. A.,
Zhou, S., and Tjian, R. (1995) Proc Natl Acad Sci U S A 92,
5788-92. |
137. |
Ito, M., Yuan, C. X., Malik,
S., Gu, W., Fondell, J. D., Yamamura, S., Fu, Z. Y., Zhang, X., Qin, J.,
and Roeder, R. G. (1999) Mol Cell 3, 361-70. |
138. |
Naar, A. M., Beaurang, P. A.,
Zhou, S., Abraham, S., Solomon, W., and Tjian, R. (1999) Nature398,
828-32. |
139. |
Malik, S., and Roeder, R. G.
(2000) Trends Biochem Sci 25, 277-83. |
140. |
Xiao, H., Tao, Y., and Roeder,
R. G. (1999) J Biol Chem 274, 3937-40. |
141. |
Kretzschmar, M., Kaiser, K.,
Lottspeich, F., and Meisterernst, M. (1994) Cell 78, 525-34. |
142. |
Ge, H., and Roeder, R. G. (1994)
Cell 78, 513-23. |
143. |
Hardy, S., Brand, M., Mittler,
G., Yanagisawa, J., Kato, S., Meisterernst, M., and Tora, L. (2002)
J
Biol Chem 277, 32875-82. |
144. |
Ikeda, K., Stuehler, T., and
Meisterernst, M. (2002) Genes Cells 7, 49-58. |
145. |
Kraus, W. L., Manning, E. T.,
and Kadonaga, J. T. (1999) Mol Cell Biol 19, 8123-35. |
146. |
Kundu, T. K., Palhan, V. B.,
Wang, Z., An, W., Cole, P. A., and Roeder, R. G. (2000) Mol Cell
6, 551-61. |
147. |
Kays, A. R., and Schepartz,
A. (2002) Biochemistry 41, 3147-55. |
148. |
Nishikawa, J., Kokubo, T., Horikoshi,
M., Roeder, R. G., and Nakatani, Y. (1997) Proc Natl Acad Sci U S A
94, 85-90. |
149. |
Tumbar, T., Sudlow, G., and
Belmont, A. S. (1999) J Cell Biol 145, 1341-54. |
150. |
Tumbar, T., and Belmont, A.
S. (2001) Nat Cell Biol 3, 134-9. |
151. |
Neely, K. E., Hassan, A. H.,
Brown, C. E., Howe, L., and Workman, J. L. (2002) Mol Cell Biol22,
1615-25. |
152. |
Brown, C. E., Howe, L., Sousa,
K., Alley, S. C., Carrozza, M. J., Tan, S., and Workman, J. L. (2001) Science
292, 2333-7. |
153. |
Memedula, S., and Belmont, A.
S. (2003) Curr Biol 13, 241-6. |
154. |
Seipel, K., Georgiev, O., and
Schaffner, W. (1992) Embo J 11, 4961-8. |
155. |
Walker, S., Greaves, R., and
O'Hare, P. (1993) Mol Cell Biol 13, 5233-44. |
156. |
Seipel, K., Georgiev, O., and
Schaffner, W. (1994) Biol Chem Hoppe Seyler 375, 463-70. |
157. |
Sullivan, S. M., Horn, P. J.,
Olson, V. A., Koop, A. H., Niu, W., Ebright, R. H., and Triezenberg, S.
J. (1998) Nucleic Acids Res 26, 4487-96. |
158. |
Lin, Y. S., and Green, M. R.
(1991) Cell 64, 971-81. |
159. |
Ingles, C. J., Shales, M., Cress,
W. D., Triezenberg, S. J., and Greenblatt, J. (1991) Nature 351,
588-90. |
160. |
O'Hare, P., and Williams, G.
(1992) Biochemistry 31, 4150-6. |
161. |
Grossmann, J. G., Sharff, A.
J., O'Hare, P., and Luisi, B. (2001) Biochemistry 40, 6267-74. |
162. |
Shen, F., Triezenberg, S. J.,
Hensley, P., Porter, D., and Knutson, J. R. (1996) J Biol Chem271,
4827-37. |
163. |
Dion, V., and Coulombe, B. (2003)
J Biol Chem 278, 11495-501. |
164. |
Perissi, V., Dasen, J. S., Kurokawa,
R., Wang, Z., Korzus, E., Rose, D. W., Glass, C. K., and Rosenfeld, M.
G. (1999) Proc Natl Acad Sci U S A 96, 3652-7. |
165. |
Gu, W., and Roeder, R. G. (1997)
Cell 90, 595-606. |
166. |
Dornan, D., Shimizu, H., Perkins,
N. D., and Hupp, T. R. (2003) J Biol Chem 278, 13431-41. |
167. |
Kumar, B. R., Swaminathan, V.,
Banerjee, S., and Kundu, T. K. (2001) J Biol Chem 276, 16804-9. |
168. |
Muscat, G. E., Burke, L. J.,
and Downes, M. (1998) Nucleic Acids Res 26, 2899-907. |
169. |
Wong, C. W., and Privalsky,
M. L. (1998) Mol Cell Biol 18, 5500-10. |
170. |
Guenther, M. G., Barak, O.,
and Lazar, M. A. (2001) Mol Cell Biol 21, 6091-101. |
171. |
Kaiser, K., and Meisterernst,
M. (1996) Trends Biochem Sci 21, 342-5. |
172. |
Bjorklund, S., and Kim, Y. J.
(1996) Trends Biochem Sci 21, 335-7. |
173. |
Rachez, C., and Freedman, L.
P. (2001) Curr Opin Cell Biol 13, 274-80. |
174. |
Wang, G., Cantin, G. T., Stevens,
J. L., and Berk, A. J. (2001) Mol Cell Biol 21, 4604-13. |
175. |
Asturias, F. J., Jiang, Y. W.,
Myers, L. C., Gustafsson, C. M., and Kornberg, R. D. (1999)
Science
283, 985-7. |
176. |
Dotson, M. R., Yuan, C. X.,
Roeder, R. G., Myers, L. C., Gustafsson, C. M., Jiang, Y. W., Li, Y., Kornberg,
R. D., and Asturias, F. J. (2000) Proc Natl Acad Sci U S A 97,
14307-10. |
177. |
Meisterernst, M., Roy, A. L.,
Lieu, H. M., and Roeder, R. G. (1991) Cell 66, 981-93. |
178. |
Ge, H., and Roeder, R. G. (1994)
J Biol Chem 269, 17136-40. |
179. |
Kretzschmar, M., Meisterernst,
M., and Roeder, R. G. (1993) Proc Natl Acad Sci U S A 90,
11508-12. |
180. |
Malik, S., Guermah, M., and
Roeder, R. G. (1998) Proc Natl Acad Sci U S A 95, 2192-7. |
181. |
Merino, A., Madden, K. R., Lane,
W. S., Champoux, J. J., and Reinberg, D. (1993) Nature 365,
227-32. |
182. |
Kamada, K., Shu, F., Chen, H.,
Malik, S., Stelzer, G., Roeder, R. G., Meisterernst, M., and Burley, S.
K. (2001) Cell 106, 71-81. |
183. |
Nolte, R. T., Wisely, G. B.,
Westin, S., Cobb, J. E., Lambert, M. H., Kurokawa, R., Rosenfeld, M. G.,
Willson, T. M., Glass, C. K., and Milburn, M. V. (1998) Nature 395,
137-43. |
184. |
Darimont, B. D., Wagner, R.
L., Apriletti, J. W., Stallcup, M. R., Kushner, P. J., Baxter, J. D., Fletterick,
R. J., and Yamamoto, K. R. (1998) Genes Dev 12, 3343-56. |
185. |
Shiau, A. K., Barstad, D., Loria,
P. M., Cheng, L., Kushner, P. J., Agard, D. A., and Greene, G. L. (1998)
Cell 95, 927-37. |
186. |
Liu, D., Ishima, R., Tong, K.
I., Bagby, S., Kokubo, T., Muhandiram, D. R., Kay, L. E., Nakatani, Y.,
and Ikura, M. (1998) Cell 94, 573-83. |
187. |
Chang, J. F., Phillips, K.,
Lundback, T., Gstaiger, M., Ladbury, J. E., and Luisi, B. (1999) J Mol
Biol 288, 941-52. |
188. |
Dunker, A. K., Lawson, J. D.,
Brown, C. J., Williams, R. M., Romero, P., Oh, J. S., Oldfield, C. J.,
Campen, A. M., Ratliff, C. M., Hipps, K. W., Ausio, J., Nissen, M. S.,
Reeves, R., Kang, C., Kissinger, C. R., Bailey, R. W., Griswold, M. D.,
Chiu, W., Garner, E. C., and Obradovic, Z. (2001) J Mol Graph Model
19, 26-59. |
189. |
Dunker, A. K., Brown, C. J.,
Lawson, J. D., Iakoucheva, L. M., and Obradovic, Z. (2002)
Biochemistry
41, 6573-82. |
190. |
Soma, G., Kitahara, N., and
Andoh, T. (1984) Biochem Biophys Res Commun 124, 164-71. |
191. |
Ballard, D. W., Philbrick, W.
M., and Bothwell, A. L. (1988) J Biol Chem 263, 8450-7. |
192. |
Kaiser, K., Stelzer, G., and
Meisterernst, M. (1995) Embo J 14, 3520-7. |
193. |
Henry, N. L., Bushnell, D. A.,
and Kornberg, R. D. (1996) J Biol Chem 271, 21842-7. |
194. |
Knaus, R., Pollock, R., and
Guarente, L. (1996) Embo J 15, 1933-40. |
195. |
Brandsen, J., Werten, S., van
der Vliet, P. C., Meisterernst, M., Kroon, J., and Gros, P. (1997)
Nat
Struct Biol 4, 900-3. |
196. |
Werten, S., Wechselberger, R.,
Boelens, R., van der Vliet, P. C., and Kaptein, R. (1999) J Biol Chem
274, 3693-9. |
197. |
Bochkarev, A., Pfuetzner, R.
A., Edwards, A. M., and Frappier, L. (1997) Nature 385, 176-81. |
198. |
Werten, S., Langen, F. W., van
Schaik, R., Timmers, H. Th. M., Meisterernst, M., and van der Vliet, P.
C. (1998) J Mol Biol 276, 367-77. |
199. |
Pan, Z. Q., Ge, H., Amin, A.
A., and Hurwitz, J. (1996) J Biol Chem 271, 22111-6. |
200. |
Jacobs, D. M., Lipton, A. S.,
Isern, N. G., Daughdrill, G. W., Lowry, D. F., Gomes, X., and Wold, M.
S. (1999) J Biomol NMR 14, 321-31. |
201. |
Binz, S. K., Lao, Y., Lowry,
D. F., and Wold, M. S. (2003) J Biol Chem. |
202. |
Ge, H., Zhao, Y., Chait, B.
T., and Roeder, R. G. (1994) Proc Natl Acad Sci U S A 91,
12691-5. |
203. |
Schang, L. M., Hwang, G. J.,
Dynlacht, B. D., Speicher, D. W., Bantly, A., Schaffer, P. A., Shilatifard,
A., Ge, H., and Shiekhattar, R. (2000) J Biol Chem 275, 6071-4. |
204. |
Soengas, M. S., Gutierrez, C.,
and Salas, M. (1995) J Mol Biol 253, 517-29. |
205. |
Dekker, J., Kanellopoulos, P.
N., Loonstra, A. K., van Oosterhout, J. A., Leonard, K., Tucker, P. A.,
and van der Vliet, P. C. (1997) Embo J 16, 1455-63. |
206. |
Wu, S. Y., and Chiang, C. M.
(1998) J Biol Chem 273, 12492-8. |
207. |
Werten, S., Stelzer, G., Goppelt,
A., Langen, F. M., Gros, P., Timmers, H. Th. M., Van der Vliet, P. C.,
and Meisterernst, M. (1998) Embo J 17, 5103-11. |
208. |
Kershnar, E., Wu, S. Y., and
Chiang, C. M. (1998) J Biol Chem 273, 34444-53. |
209. |
Wu, S. Y., Kershnar, E., and
Chiang, C. M. (1998) Embo J 17, 4478-90. |
210. |
Fukuda, A., Tokonabe, S., Hamada,
M., Matsumoto, M., Tsukui, T., Nogi, Y., and Hisatake, K. (2003) J Biol
Chem. |
211. |
Bohm, M., Kirch, H., Otto, T.,
Rubben, H., and Wieland, I. (1997) Int J Cancer 74, 291-5. |
212. |
Wieland, I., Bohm, M., Arden,
K. C., Ammermuller, T., Bogatz, S., Viars, C. S., and Rajewsky, M. F. (1996)
Oncogene 12, 97-102. |
213. |
Kannan, P., and Tainsky, M.
A. (1999) Mol Cell Biol 19, 899-908. |
214. |
Haile, D. T., and Parvin, J.
D. (1999) J Biol Chem 274, 2113-7. |
215. |
Holloway, A. F., Occhiodoro,
F., Mittler, G., Meisterernst, M., and Shannon, M. F. (2000) J Biol
Chem 275, 21668-77. |
216. |
Ge, H., Si, Y., and Roeder,
R. G. (1998) Embo J 17, 6723-9. |
217. |
Calvo, O., and Manley, J. L.
(2001) Mol Cell 7, 1013-23. |
218. |
Wang, Z., and Roeder, R. G.
(1998) Mol Cell 1, 749-57. |
219. |
Gu, W., Malik, S., Ito, M.,
Yuan, C. X., Fondell, J. D., Zhang, X., Martinez, E., Qin, J., and Roeder,
R. G. (1999) Mol Cell 3, 97-108. |
220. |
Currie, R. A. (1998) J Biol
Chem 273, 18220-9. |
221. |
Fondell, J. D., Guermah, M.,
Malik, S., and Roeder, R. G. (1999) Proc Natl Acad Sci U S A 96,
1959-64. |
222. |
Luo, Y., Ge, H., Stevens, S.,
Xiao, H., and Roeder, R. G. (1998) Mol Cell Biol 18, 3803-10. |
223. |
Muramatsu, S., Handa, A., Kajigaya,
S., and Brown, K. E. (1998) J Gen Virol 79 ( Pt 9), 2157-61. |
224. |
Weger, S., Wendland, M., Kleinschmidt,
J. A., and Heilbronn, R. (1999) J Virol 73, 260-9. |
225. |
Wu, S. Y., and Chiang, C. M.
(2001) J Biol Chem 276, 34235-43. |
226. |
Guo, H., Cai, C. Q., and Kuo,
P. C. (2002) J Biol Chem 277, 5054-60. |
227. |
Cramer, P., Bushnell, D. A.,
Fu, J., Gnatt, A. L., Maier-Davis, B., Thompson, N. E., Burgess, R. R.,
Edwards, A. M., David, P. R., and Kornberg, R. D. (2000) Science
288, 640-9. |
228. |
Struhl, K. (1996) Cell
84, 179-82. |
229. |
Burley, S. K., and Roeder, R.
G. (1996) Annu Rev Biochem 65, 769-99. |
230. |
Lacoste, J., Codani-Simonart,
S., Best-Belpomme, M., and Peronnet, F. (1995) Nucleic Acids Res
23, 5073-9. |
231. |
Folkers, G. E., and van der
Saag, P. T. (1995) Mol Cell Biol 15, 5868-78. |
232. |
Cavanagh, J., Fairbrother, W.
J., Palmer III, A. G., and Skelton, N. J. (1996) Protein NMR Spectroscopy,
Academic Press, San Diego, CA. |
233. |
Mulder, F. A. A., de Graaf,
R. A., Kaptein, R., and Boelens, R. (1998) J Magn Reson 131,
351-7. |
234. |
Delaglio, F., Grzesiek, S.,
Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J Biomol NMR6,
277-93. |
235. |
Sadowski, I., Ma, J., Triezenberg,
S., and Ptashne, M. (1988) Nature 335, 563-4. |
236. |
Lillie, J. W., and Green, M.
R. (1989) Nature 338, 39-44. |
237. |
Folkers, G. E., van der Leede,
B. J., and van der Saag, P. T. (1993) Mol Endocrinol 7, 616-27. |
238. |
Wang, Y., and Jardetzky, O.
(2002) Protein Sci 11, 852-61. |
239. |
Wishart, D. S., and Sykes, B.
D. (1994) J Biomol NMR 4, 171-80. |
240. |
Cornilescu, G., Delaglio, F.,
and Bax, A. (1999) J Biomol NMR 13, 289-302. |
241. |
Baxter, N. J., and Williamson,
M. P. (1997) J Biomol NMR 9, 359-69. |
242. |
Koradi, R., Billeter, M., and
Wuthrich, K. (1996) J Mol Graph. 14, 51-5, 29-32. |
243. |
Vis, H., Boelens, R., Mariani,
M., Stroop, R., Vorgias, C. E., Wilson, K. S., and Kaptein, R. (1994) Biochemistry
33, 14858-70. |
244. |
Kobor, M. S., and Greenblatt,
J. (2002) Biochim Biophys Acta 1577, 261-275. |
245. |
Dahmus, M. E. (1994) Prog
Nucleic Acid Res Mol Biol 48, 143-79. |
246. |
Cadena, D. L., and Dahmus, M.
E. (1987) J Biol Chem 262, 12468-74. |
247. |
Bensaude, O., Bonnet, F., Casse,
C., Dubois, M. F., Nguyen, V. T., and Palancade, B. (1999)
Biochem Cell
Biol 77, 249-55. |
248. |
Karin, M., and Hunter, T. (1995)
Curr Biol 5, 747-57. |
249. |
Hill, C. S., and Treisman, R.
(1995) Cell 80, 199-211. |
250. |
Brivanlou, A. H., and Darnell,
J. E., Jr. (2002) Science 295, 813-8. |
251. |
Bienkiewicz, E. A., and Lumb,
K. J. (1999) J Biomol NMR 15, 203-6. |
252. |
Hathaway, G. M., and Traugh,
J. A. (1983) Methods Enzymol 99, 317-31. |
253. |
Pinna, L. A. (1990) Biochim
Biophys Acta 1054, 267-84. |
254. |
van Breukelen, B., Kanellopoulos,
P. N., Tucker, P. A., and van der Vliet, P. C. (2000) J Biol Chem
275, 40897-903. |
255. |
Tucker, P. A., Tsernoglou, D.,
Tucker, A. D., Coenjaerts, F. E., Leenders, H., and van der Vliet, P. C.
(1994) Embo J 13, 2994-3002. |
256. |
Choy, B., and Green, M. R. (1993)
Nature 366, 531-6. |
257. |
Tjian, R., and Maniatis, T.
(1994) Cell 77, 5-8. |
258. |
Bentley, D. L. (1995) Curr
Opin Genet Dev 5, 210-6. |
259. |
Donaldson, L., and Capone, J.
P. (1992) J Biol Chem 267, 1411-4. |
260. |
Tanaka, M. (1996) Proc Natl
Acad Sci U S A 93, 4311-5. |
261. |
Uversky, V. N. (2002) Protein
Sci 11, 739-56. |
262. |
Ptitsyn, O. B., and Uversky,
V. N. (1994) FEBS Lett 341, 15-8. |
263. |
Morelli, X. J., Palma, P. N.,
Guerlesquin, F., and Rigby, A. C. (2001) Protein Sci 10,
2131-7. |
264. |
Palma, P. N., Krippahl, L.,
Wampler, J. E., and Moura, J. J. (2000) Proteins 39, 372-84. |
265. |
Guex, N., and Peitsch, M. C.
(1997) Electrophoresis 18, 2714-23. |
266. |
van Gunsteren, W. F., Billeter,
S. R., Eising, A. A., Hünenberger, P. H., Krüger, P., Mark, A.
E., Scott, W. R. P., and Tironi, I. G. (1996). |
267. |
Dominguez, C., Boelens, R.,
and Bonvin, A. M. (2003) J Am Chem Soc 125, 1731-7. |
268. |
Brunger, A. T., Adams, P. D.,
Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang,
J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M.,
Simonson, T., and Warren, G. L. (1998) Acta Crystallogr D Biol Crystallogr
54 ( Pt 5), 905-21. |
269. |
Linge, J. P., O'Donoghue, S.
I., and Nilges, M. (2001) Methods Enzymol 339, 71-90. |
270. |
Güntert, P., Mumenthaler,
C., and Wüthrich, K. (1997) J Mol Biol 273, 283-98. |
271. |
Herrmann, T., Güntert,
P., and Wüthrich, K. (2002) J Mol Biol 319, 209-27. |
272. |
Hori, R., Pyo, S., and Carey,
M. (1995) Proc Natl Acad Sci U S A 92, 6047-51. |
273. |
Roberts, S. G., Ha, I., Maldonado,
E., Reinberg, D., and Green, M. R. (1993) Nature 363, 741-4. |
274. |
Gupta, R., Emili, A., Pan, G.,
Xiao, H., Shales, M., Greenblatt, J., and Ingles, C. J. (1996)
Nucleic
Acids Res 24, 2324-30. |
275. |
Chou, S., and Struhl, K. (1997)
Mol Cell Biol 17, 6794-802. |
276. |
Cousens, D. J., Greaves, R.,
Goding, C. R., and O'Hare, P. (1989) Embo J 8, 2337-42. |
277. |
Frankel, A. D., and Kim, P.
S. (1991) Cell 65, 717-9. |
278. |
Freedman, S. J., Sun, Z. Y.,
Poy, F., Kung, A. L., Livingston, D. M., Wagner, G., and Eck, M. J. (2002)
Proc Natl Acad Sci U S A 99, 5367-72. |
279. |
Dames, S. A., Martinez-Yamout,
M., De Guzman, R. N., Dyson, H. J., and Wright, P. E. (2002)
Proc Natl
Acad Sci U S A 99, 5271-6. |
280. |
Lo Conte, L., Chothia, C., and
Janin, J. (1999) J Mol Biol 285, 2177-98. |
281. |
Roberts, S. G., and Green, M.
R. (1994) Nature 371, 717-20. |
282. |
Hall, D. B., and Struhl, K.
(2002) J Biol Chem 277, 46043-50. |
283. |
Kobor, M. S., Simon, L. D.,
Omichinski, J., Zhong, G., Archambault, J., and Greenblatt, J. (2000) Mol
Cell Biol 20, 7438-49. |
|