Genetics Tutorial


Preface | Introduction | Fancy Rat Genetics 101 | Table of Loci


Preface

Unfortunately, many people who own rats (or any animal for that matter) and decide to breed have not the slightest understanding of basic genetics. They think that a pretty Blue Dumbo mated with their adorable Hooded Fawn will produce an array of wonderfully colored babies. Too many times people fantasize about what the babies will look like and they assume that the most desirable physical traits will be passed on from each of the parents. This is not at all true, and those who have bred without doing their homework will wonder why that beautiful Blue Dumbo and Hooded Fawn produced a litter of 12 standard agouti pups.

Now I'm no geneticist, and I do not claim to be an expert, but I have taken the time to learn about basic genetics in fancy rats. I learn something new everyday. I urge anyone planning to breed to aquire at least a basic understanding of genetics in fancy rats. Why? Because so many times I have run into good hearted pet owners that just decide to breed for the heck of it, and they assume that their much loved and maybe very beautiful pets will produce offspring with desirable characteristics of each parent. They then end up with a litter off all agouti babies (which are very hard to place in my experiences) which don't get adopted out, and unfortunately end up in petshops as snake food.

Personally I love rats, no matter the color. It's their personalities that hooked me. But to many people, a fancy agouti rat looks like a wild sewer rat, and not like the intelligent domesticated pet it really is. If you are going to breed fancy rats be prepared when the rest of the world doesn't share your enthusiasm. We live in a society where "pretty is better", So if you are going to bring innocent creatures into the world, at least give them a head start by making sure that they will have beauty as well as brains. Remember, most people don't buy pets because they are smart, they buy them because they are cute!

In this tutorial I will talk about basic coat color genetics of fancy rats. I will discuss various terms throughout to get you aquainted, and then will go into further detail on how to predict the outcome of particular matings.


Preface | Introduction | Fancy Rat Genetics 101 | Table of Loci


Introduction

As a breeder you will want to produce animals that have desirable quailities. This is why having at least a basic understanding of genetics is vital.

Now I'm not going to go into a full explanation of chromosomes, DNA and what a double-helix is (you should have paid attention in high school!) I will focus only on what is relevant to gaining a basic understanding of genetics in fancy rats.


Preface | Introduction | Fancy Rat Genetics 101 | Table of Loci


Fancy Rat Genetics 101

All creatures are made up of cells which contain chromosomes. Rats have 42 chromosomes in each cell except the sex cells (egg or sperm) which only have 21. So when rats mate, half of the mother's chromosomes are in her egg and half of the father's chromosomes are in his sperm. Therefore the combination of the egg and the sperm form an embryo with 42 chromosomes. The chromosomes are made up of various genes (dominant or recessive) that affect physical appearance. Keep in mind that each egg and each sperm contain a different combination of chromosomes to be passed along, thus the reason why siblings differ in appearance despite them having common parents.

Each gene has a location on the chromosome known as a locus. Loci (plural of locus) define where specific genetic traits are found on the chromosome. Scientists are discovering new loci all the time.

Each locus holds two genes. One gene is inherited from each parent. The genes for a specific trait may be either dominant or recessive, depending on the parents. These dominant or recessive versions of genes are refered to as alleles.

When the same gene (allele), either dominant or recessive, occupies both positions on the locus, this is known as a homozygous trait (The prefix homo means same). For example: A homozygous agouti rat (A/A) has the "A" allele at both positions on the Agouti locus. A homozygous non-agouti rat (a/a) has the "a" allele occupying both postions on the locus.

When the opposite allele occupies the corresponding position on a locus, that trait is said to be heterozygous (The prefix hetero means opposite). An example would be a heterozygous agouti (A/a). The rat will look the same as a homozygous agouti (A/A), but the heterozygous rat will carry the recessive "a" non-agouti allele.

Certain traits are recessive and some are dominant. If a trait is dominant it is represented by a capital letter, and it needs only one dominant allele (heterozygous) to show. If one parent is homozygous for a dominant trait, all the offspring will show that trait. If a trait is recessive, it must be homozygous to show, meaning that both parents must carry the gene for that trait for it to be displayed in the offspring..

Without getting too complex...there are yet other sets of genes known as modifiers or polygenes. These genetic modifiers do not have loci all their own, instead they latch on to compatible genes and alter their effect.(See Locus C). Polygenes are responcible for the intensity of certain traits. Some black rats have a deep jet black appearance, while others have a dull charcoal black appearance. They both display a black coat color genetically, however thier polygenes may vary causing the slight difference in intensity. The same goes for rex coated rats; some being very curly, others with just slightly frizzy hair. You will never get a superb looking animal of show quality from breeding "so so looking" rats. Breeders take animals that possess desirable traits and pair them with others that are genetically compatible and also share desirable traits.

The table below shows a number of recognized rat loci known to affect coloration, hair texture, body structure, etc. Keep in mind that various genes cause similar traits. Ex: the gene(s) responsible for a rat's curly hair may be Cu1, Cu2, Sh, Re, K, or Wv.


Preface | Introduction | Fancy Rat Genetics 101 | Table of Loci


Table of Loci

A - Agouti Locus (dominant)
Alleles Name Appearance
A/A Agouti homozygote Agouti banding of the hair shaft
A/a Agouti heterozygote Agouti banding of the hair shaft
a/a Non-Agouti No banding of the hair shaft
 
B - Black Locus (dominant)
Alleles Name Appearance
B/B Black homozygote Black
B/b Black heterozygote Black
b/b Non-Black Brown
 
C - Coloration/Pigment Locus (dominant)
Alleles Name Appearance
C/C Colored no effect
C/c Colored no effect
c/c Non-Color No Pigment (Albino)
c/c(h) heterozygous pointed Himilayan
c(h)/c(h) homozygous pointed Siamese
 
Cu1 - Curly 1 Locus (dominant)
Alleles Name Appearance
Cu1/Cu1 Curly homozygote curly
Cu1/cu1 Curly heterozygote curly
cu1/cu1 non-curled no effect
 
Cu2 - Curly 2 Locus (dominant)
Alleles Name Appearance
Cu2/Cu2 Curly homozygote curly
Cu2/cu2 Curly heterozygote curly
cu2/cu2 non-curled no effect
 
D - Dilute Locus (recessive)
Alleles Name Appearance
D/D standard no effect
D/d carrier no effect
d/d dilute dilutes black to slate blue/grey
 
Du - Dumbo Locus (recessive)
Alleles Name Appearance
Du/Du standard no effect
Du/du carrier no effect
du/du dumbo dumbo eared
 
F - Fawn Locus (recessive)
Alleles Name Appearance
F/F standard no effect
F/f carrier no effect
f/f fawn dilutes brown to coffee
 
Fa - Fatty Zucker Locus (recessive)
Alleles Name Appearance
Fa/Fa standard no effect
Fa/fa carrier no effect
fa/fa Zuckers very large, obese, diabetic rat
 
Fz - Fuzzy Locus (recessive)
Alleles Name Appearance
Fz/Fz standard no effect
Fz/fz carrier no effect
fz/fz fuzzy hairless/fuzzy
 
G - Greying Locus (recessive)
Alleles Name Appearance
G/G standard no effect
G/g carrier no effect
g/g grey/blue dilutes black to slate grey/blue
 
H - Hooding Locus
Alleles Name Appearance
H/H non-hooding homozygote no effect
H/h heterozygous hooding berkshire
H/h(i) single modified heterozygote hooding Irish
H/h' modified heterozygote hooding variegated
h'/h' double modified homozygous hooding broken
h/h' single modified homozygous hooding capped
h/h hooded hooded
The degree of hooding and other related markings are far more complex than shown here. Marking such as capped or broken may be a result of dominamt white head spotting as well. Selective breeding plays an important role in the development of these markings.
Hr - Hair Locus (recessive)
Alleles Name Appearance
Hr/Hr standard no effect
Hr/hr carrier no effect
hr/hr hairless hairless
 
Inhibitor (recessive)
Alleles Name Appearance
I/I standard no effect
I/i carrier no effect
i/i inhibitor (smoked) smoked - base to mid- hair shaft is white
 
K - Kinked Locus (recessive)
Alleles Name Appearance
K/K standard no effect
K/k carrier no effect
k/k kinked kinked hair
 
M - Mink Locus (recessive)
Alleles Name Appearance
M/M standard no effect
M/m carrier no effect
m/m minked minked
 
N - Nude Locus (recessive)
Alleles Name Appearance
N/N standard no effect
N/n carrier no effect
n/n nude hairless
 
Oe - Odd Eye Locus (recessive)
Alleles Name Appearance
Oe/Oe standard no effect
Oe/oe carrier no effect
oe/oe odd eyed each eye is different color
 
P - Pink Eye Dilute Locus (recessive)
Alleles Name Appearance
P/P standard no effect
P/p carrier no effect
p/p pink eye dilute pink eyes and dilute coat color
 
Pe - Pearling Locus
Alleles Name Appearance
Pe/Pe non-pearled no effect
Pe/pe pearled (hidden) no effect w/o mink
pe/pe lethal pearled lethal homozygous
Pe/pe m/m pearled pearled
Pe/pe M/m pearled (hidden) pearled (can't show w/o mink)
Pe/pe M/M pearled (hidden) pearled (can't show w/o mink)
 
R - Red Eye Dilute Locus (recessive)
Alleles Name Appearance
R/R standard no effect
R/r carrier no effect
r/r red eye dilute red/ruby eyes and dilute coat color
 
Re - Rexing Locus (dominant)
Alleles Name Appearance
Re/Re Rex homozygote Rexed
Re/re Rex heterozygote Rexed
re/re non-rex no effect
 
S - Silvering Locus (recessive)
Alleles Name Appearance
S/S standard no effect
S/s carrier no effect
s/s silvering silvered
 
Sd - Sand Locus (recessive)
Alleles Name Appearance
Sd/Sd standard no effect
Sd/sd carrier no effect
sd/sd sand??? (Thought to be extinct) dilutes agouti to a sandy brown???
 
Sh - Shaggy Locus (dominant)
Alleles Name Appearance
Sh/Sh shaggy homozygote long/wavy hair
Sh/sh shaggy heterozygote long/wavy hair
sh/sh non-shaggy no effect
 
Tal - Tail Locus (dominant)
Alleles Name Appearance
Tal/Tal tailless no tail
Tal/tal tailless stub tail
tal/tal standard tail present
 
Wv - Wavy Locus (recessive)
Alleles Name Appearance
Wv/Wv standard no effecy
Wv/Wv carrier no effect
wv/wv wavy wavy hair

Preface | Introduction | Fancy Rat Genetics 101 | Table of Loci


Now let's put what we've learned to use. Here is the example:

RAT #1 is homozygous for Black and Russian Blue, heterozygous for dumbo, and homozygous for rexing.

RAT #2 is homozygous for black and heterozygous for Russian Blue.

What will the offspring look like?

Step 1 - Write out the genotype of each:

RAT #1: a/a B/B C/- d/d Du/du Re/Re

RAT #2: a/a B/B C/- D/d

Step 2 - Eliminate the common genes (shown in green above):

RAT #1: d/d Du/du Re/Re

RAT #2: D/d

Step 3 - Add in the hidden recessive genes (shown in orange below):

RAT #1: d/d Du/du Re/Re

RAT #2: D/d Du/Du re/re

Step 4 - Make Punnett Squares, one for each trait (in this case, D, Du and Re):

X d d   X Du du   X Re Re
D Dd Dd   Du DuDu Dudu   re Rere Rere
d dd dd   Du DuDu Dudu   re Rere Rere
50% Russian Blue homozygotes

50% Black, heterozygous for Russian Blue

  50% carry dumbo

50% regular

  100% rex heterozygotes

This litter will be 100% rex, each with a 50% chance of being blue or black, and a 50% chance of carrying dumbo.

See table below for more examples:


Beige X Albino
X C C
c Cc Cc
c Cc Cc
100% Beige carrying Albino
Black X Brown
X B B
b Bb Bb
b Bb Bb
100% Black carrying Brown
Pearl X Mink
X Pe pe
pe Pepe pepe
pe Pepe pepe
50% Pearl, 50% mink
Albino X Himalayan
X c c
c(h) c(h)c c(h)c
c cc cc
50% Himalayan, 50% Albino
Siamese X Albino
X c(h) c(h)
c c(h)c c(h)c
c c(h)c c(h)c
100% Himalayan
Siamese X Himalayan
X c(h) c
c(h) c(h)c(h) c(h)c
c(h) c(h)c(h) c(h)c
50% Siamese, 50% Himalayan
Cinnamon Pearl X Pearl
X A A   X Pe pe
a Aa Aa   Pe PePe Pepe
a Aa Aa   pe Pepe pepe
50% Cinnamon Pearl carrying Pearl, 25% Lethal, 25% Cinnamon carrying Mink
Platinum X Blue Agouti
X a a   X r r
A Aa Aa   R Rr Rr
A Aa Aa   R Rr` Rr
100% Blue Agoutis carrying non agouti and red eye dilute.
Brown X Siamese carrying brown
X b b   X c(h) c(h)
B Bb Bb   C Cc(h) Cc(h)
b bb bb   C Cc(h) Cc(h)

50% Black carrying brown and siamese. 50% brown carrying siamese.

Black X Blue
X G G
g Gg Gg
g Gg Gg
100% Black carrying Blue
Black carrying Blue X Blue
X G g
g Gg gg
g Gg gg
50% Black carrying Blue, 50% Blue
Silver Rex X Mink Rex
X G G   X M M   X P P
g Gg Gg   m Mm Mm   p Pp Pp
g Gg Gg   m Mm Mm   p Pp Pp
100% Black Rex carrying Blue, Mink, and pink eye dilute

These are genetic estimates. (50% Himalayan, 50% Siamese doesn't necessarily mean that an even number of Himalayan and Siamese will be born) These are just the scientific probabilities. Litters may vary in size anywhere from as few as 1 pup, to as many as 24! On occation, embryos that are not developing normally are absorbed and never born. So if you're looking for that one color that you thought for sure would pop up in this litter, and hasn't, take into consideration that nature works in mysterious ways.


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