Altenberg, L. (1994). The evolution of evolvability in genetic programming. In: Kinnear, K. E. (ed.). Advances in Genetic Programming. Cambridge: MIT Press, pp. 47-74.
Altenberg, L. (1995). Genome growth and the evolution of the genotype-phenotype map. In: Banzhaf, W. and Eeckman, F. H. (eds). Evolution and Biocomputation. Computational Models of Evolution. New York-Heidelberg-Berlin: Springer-Verlag, pp. 205-259.
Bonner, J. T. (1988). The Evolution of Complexity. Princeton University Press.
Choo, Y. and Klug, A. (1994). Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage. Proc. Natl. Acad .Sci. USA 91: 11163-11167.
Choo, Y. and Klug, A. (1994). Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions. Proc. Natl. Acad .Sci. USA 91: 11168-11172 .
Clarke B., Mittenthal, J. E. and Senn, M. (1993). A model for the evolution of networks of genes. J. Theor. Biol. 165: 269-89.
Dellaert, F. and Beer, R.D. (1994). Toward an evolvable model of development for autonomous agent synthesis. In: Brooks, R. and Maes, P. (eds). Artificial Life IV: Proceedings of the Fourth International Workshop on the Synthesis and Simulation of Living Systems. Boston: MIT Press.
Eigen M., McCaskill J. and Schuster P. (1989). The molecular quasispecies. Adv. Chem. Phys. 75, 149-263.
Fujioka, M., Jaynes, J.B. and Goto, T. (1995). Early even-skipped stripes act as morphogenetic gradients at the single cell level to establish engrailed expression. Development 121: 4371-82
Hoch, M., Schroder, C., Seifert, E. and Jäckle H . (1990). Cis-acting control elements for Kruppel expression in the Drosophila embryo. EMBO J. 9: 2587-2595.
Hunding, A. and Engelhardt, R. (1995). Early biological morphogenesis and nonlinear dynamics, J. theor. Biol. 173: 401-413.
Jäckle, H., Hoch, M., Pankratz, M.J., Gerwin, N., Sauer, F. and Bronner, G . (1992). Transcriptional control by Drosophila gap genes. J. Cell Sci. Suppl. 16: 39-51.
Kauffman, S. A. (1993). The origins of Order: Self-Organisation and Selection in Evolution. Oxford University Press.
Kappen, C., Schughart, K., Ruddle, F.H. (1989). Two steps in the evolution of Antennapedia-class vertebrate homeobox genes. Proc. Natl. Acad. Sci. USA 86: 5459-5463.
Kimura, M. (1968). Evolutionary rate at the molecular level, Nature, 217: 624-626.
Kitano, H. (1994). Evolution of Metabolism for Morphogenesis. In: Brooks, R. and Maes, P. (eds). Artificial Life IV: proceedings of the fourth international workshop on the synthesis and simulation of living systems. Boston: MIT Press.
Mjolsness, E., Sharp, D. H. and Reinitz, J. (1991). A Connectionist Model of Development. J. Theor. Biol. 152: 429-453.
Mitchell, M. and Forrest, S. (1995). Genetic algorithms and artificial life. To appear in Artificial Life.
Pankratz, M.J., Busch, M., Hoch, M., Seifert, E. and Jäckle, H. (1992). Spatial control of the gap gene knirps in the Drosophila embryo by posterior morphogen system. Science 255: 986-989.
Patel, N.H., Ball, E.E. and Goodman, C.S. (1992). Changing role of even-skipped during the evolution of insect pattern formation. Nature 357: 339-342
Reinitz, J., Mjolsness, E. and Sharp, D. H. (1995). Model for cooperative control of positional information in Drosophila by bicoid and maternal hunchback. J. Exp. Zool. 271: 47-56.
Reinitz, J. and Sharp, D. H. (1995). Mechanism of eve stripe formation. Mech. Dev. 49: 133-158.
Rocha, L. M. (1995). Lecture Notes for the Course Introduction to Artificial Life (SSIE-504). Unpublished Manuscript.
Schughart, K., Kappen, C. and Ruddle, F.H. (1989). Duplication of large genomic regions during the evolution of vertebrate homeobox genes. Proc. Natl. Acad. Sci. USA 86: 7067-7071.
Sommer, R.J. and Tautz, D. (1993). Involvement of an orthologue of the Drosophila pair-rule gene hairy in segment formation of the short germ-band embryo of Tribolium (Coleoptera). Nature 361: 448-450.
Suzuki, M. and Yagi N. (1995). Stereochemical basis of DNA bending by transcription factors. Nucleic Acids Res. 23: 2083-2091.
Suzuki, M. and Yagi, N. (1994). DNA recognition code of transcription factors in the helix-turn-helix, probe helix, hormone receptor, and zinc finger families. Proc. Natl. Acad. Sci. USA 91: 12357-12361.
Tautz, D. and Sommer, R.J. (1995). Evolution of segmentation genes in insects. Trends Genet. 11: 23-27.
Wagner, G. (1995). Adaptation and the modular design of organisms. In: F. Moran,Moreno, A., Merelo, J.J. and Chacon, P. (eds). Advances in Artificial Life. Series: Lecture Notes in Artificial Intelligence, New York-Heidelberg-Berlin: Springer-Verlag, pp. 317-328.
Wagner, G.P. and Altenberg, L.. (1995). Complex Adaptations and the Evolution of Evolvability. WWW publication: http://peaplant.biology.yale.edu:8001/papers/CompAdapt/compadapt.html.
Wallace, B. (1985). Reflections on the still "hopeful monster". Quart. Rev. Biol. 60: 31-42
Wolff, C., Sommer, R., Schroder, R., Glaser, G. and Tautz, D. (1995). Conserved and divergent expression aspects of the Drosophila segmentation gene hunchback in the short germ band embryo of the flour beetle Tribolium. Development 121: 4227-4236.