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BIOLOGICAL DATABASES

MAJOR DATABASES
HUMAN DATABASES
PLANT DATABASES
BACTERIAL DATABASES
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RNA DATABASES
OTHER DATABASES

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MAJOR NUCLEOTIDE SEQUENCE DATABASES

GENEBANK Genebank Database

EMBLNSD EMBL Nucleotide Sequence Database

DDBJ DNA DataBank of Japan

HUMAN DATABASES

GDB The Human Genome Database

HuGeMap A distributed and integerated Human Genome Map Databases

IXDB An X chrosome integerated Database

MITOMAP A human mitochondrial Database-1998 update

VIRGIL A Database rich of links between GDB and GenBank

mtDNA Compilation of Human Mitochondrial Control region sequences

PLANT DATABASES

TIGR TIGR

BACTERIAL DATABASES

ECD & ECDC Compilation of DNA Sequence of E.coli K-12: Description of Interractive Databases ECD & ECDC

ECOCYC Encyclopedia of E.coli Genes and Metabolism

GenProtEC Genes and Proteins of E.coli K-12

NRSub The NRSub Database (B. subtilis database of sequence)

NRSub The NRSub Database (B. subtilis database of sequence)

RNA DATABASES

5SRNA Compilation of 5SrRNA & 5SrRNA Gene Segments

5SRNA Compilation of 5SrRNA & 5SrRNA Gene Segments

sRNADB Small RNA Database

uRNADB The uRNA Database

gRNADB The Guide RNA Database

RDP The Ribosomal Database Project

tmRNA The tmRNA Website

tmRDB The first release of tmRNA Database

tRNADB Compilation of tRNA sequences & sequences of tRNA genes

rRNASSUDB Database on the struture of small ribosomal subunit RNA

rRNALSUDB Database on the structure of large ribosomal subunit RNA (>450 large subunit ribosomal RNA sequences)

DRC The Database of Ribosomal Cross Links

RNAmodDB The RNA Modification Database-1998

MOUSE GENOME DATABASE

MGDB A comprehensive public release of mouse genetic, phenotypic & genomic data

DROSOPHILA DATABASES

FLYBASE A Drosophila melanogaster Database

GIF_DB A WWW Database on Gene Interaction in Drosophila melanogaster Development

Flynet & GIFDB Two internet Databases for molecular interactions in Drosophila melanogaster

YEAST DATABASES

YPD Yeast Protein Database: A database of complete proteome of Saccharomyces cerevisiae

MIPS Database for Protein Sequences, Homology data & Yeast Genome Information

OTHER DATABASES

RHDB The Radiation Hybrid Database

MPDB Molecular Probe Database

SRPDB The Signal Recognition Particle Database

GSDB Genome Sequence Database Version 1.0

PIR The Protein Information Tool and Protein Sequence Database

SWISS-PROT The Swiss-prot Sequence Database & its Supplement TrEMBL

METABOLISM The Metabolic Pathway collection

METABOLISM The Metabolic Pathway collection

MitBase A comprensive and integerated mitochondrial Database

MmtDB A metazoa mitochondrial DNA variants Database

GOBSE The Organelle Genome Database Project: integerates data related to organelles

U-i/dESD Compilation of mt. genes and edited mRNAs from Kinetoplastid sp.

UTRdb A specialized Database of 5' and 3' untranslated regions of eukaryotic mRNAs

UNSORTED DATABASES
  • Malaria Database - repository of scientific information about malaria parasites, particularly Plasmodium. Includes genome information and a discussion list.
  • Database Of Genome Sizes (DOGS) - database of the most sequenced organisms and their expected or actual genome sizes. excellent for comparison of genome complexity in several species.
  • Sinai's Mammary Transgenes Database - A searchable database of transgenes directed to the mammary gland for bioreactor use. Protein in milk of rodents and livestock, phenotypes, tumor rated.
  • Influenza Sequence Database - sequence database and analysis tools to aid researchers studying influenza A, B, and C viruses.
  • Bacillus Subtilis Genetic Database
  • RATMAP - The Rat Genome Database
  • ChickBASE - database of the chicken genome.
  • SoyBase - USDA soybean genome database, includes genetic and QTL maps, clickable metabolic pathway diagrams, and many other topics of interest to geneticists and breeders.
  • GrainGenes - USDA-sponsored database providing molecular and phenotypic information on wheat, barley, rye, oats, and sugarcane.
  • FlyBase - a comprehensive database for information on the genetics and molecular biology of Drosophila.
  • Arabidopsis thaliana Database - an easy-to-use interface to the vast amount of data being produced by the Arabidopsis research community.
    http://genome-www.stanford.edu/Arabidopsis/

  • SoyBase - USDA soybean genome database, includes genetic and QTL maps, clickable metabolic pathway diagrams, and many other topics of interest to geneticists and breeders.

  • Bean Genes - plant genome database which contains information relevant to Phaseolus and Vigna species.

  • RiceBlastDB - database for the rice blast fungus, Magnaporthe grisea.

 

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