README.html

May-28-97

Regulatory Sites, Promoters, and Operon Predictions in the complete genome sequence of Escherichia coli.

Release 4.0

The files available in this webpage contain the predictions of promoters, of regulatory sites, and operons in the complete genome sequence of E. coli.

A summary of these results is presented as part of the paper: Blattner F.R.; Plunkett III G.; Bloch C.A.; Perna N.T.; Burland V.; Riley M.; Collado-Vides J.; Glasner J.D.; Rode C.K.; Mayhew G.; Gregor J.; Davis N.W.; Kirkpatrick H. A.; Goeden M.A.; Rose D.J.; Mau B.; Shao Y. (1997) "The complete genome sequence of Escherichia coli K-12" Science 277: 1453-1462

The details of the methods used for these predictions will be published in a couple of papers:

Huerta A.M.; Salgado H.; and Collado-Vides J. "Whole Genome promoter prediction in Escherichia coli" (to submit)

Thieffry D.; Salgado H.; Huerta A.M. y Collado-Vides J. (1998) "Prediction of transcription regulatory sites in the complete genome of Escherichia coli" Bioinformatics (in press)

The information on the database used for these predictions is contained in RegulonDB, -see http://www.cifn.unam.mx/Computational_Biology/regulondb/ and the associated publication:

Huerta A.M.; Salgado H.; Thieffry D. y Collado-Vides J. (1998) "RegulonDB: A Database on Transcription Regulation in Escherichia coli" Nucleic Acids Res. 26: 55-60

 Name                   Description     Size  



 Parent Directory       

 E.coli.operons.txt     Predicted and known operons in the complete E.coli 
                           genome sequence. 424kB  
 E.coli.promoters.txt   Promoters predicted in the complete E.coli genome 
                           sequence. 1080KB
 E.coli.sites.txt       Regulatory sites predicted on putative regulatory 
                           regions of the E.coli genome. 408kB